PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G072600.1
Common NameB456_007G072600, LOC105802401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 521aa    MW: 56590.6 Da    PI: 5.0718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G072600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11336378754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Gorai.007G072600.1 336 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 378
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16332399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9335378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-14335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-15336391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-13336382No hitNo description
CDDcd048733.65E-8449513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MVLGANGVVW MGGEEEEEDA ISSWTRNNNN DGNANNEFET KEDDLAMSAA SLSSFKSMLD  60
ADWYINPAMN QDLQIRDLGF CSNQVDNSLL LHHQIDSSAS CSPSQAFTLD PSQSHPLLPP  120
KSCFSSLLNV SCHNPFDNAF DFASEPAFLA QFQPNPTPNL MAFPQTQMGT PEFSSSSEFQ  180
GTRLFAGTEN ASPLSGGFSA GGFDGSGNVP FVNRAKTLKP LEVFPSVGSQ PTLFQKRAAM  240
RQGSGGSDKL GNLDVSELRF GGEASDGKRK RHGELDIEEA SIDVSGLNYD SDERNGDCKL  300
EETVNNGGCN SNATSTVTGG GDQKGKKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS  360
KMDRASILGD AIDYLKELLR KINDLHTELE STPPGSLMPP STSIHPLTPT PPTLPCRVKE  420
ELCPSSLPSS KSQPAKVEVR VREGRAVNIH MFCARRPGLL LSTMRALDNL GLDIQQAVIS  480
CFNGFALDVF RAEQCREEQE LMAEQIKAVL LDSAGFHGIM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325343KKKGMPAKNLMAERRRRKK
2337344ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489464.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-164ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0D2S8J10.0A0A0D2S8J1_G
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-145bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]